miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|85037626|gb|DW565804.1|DW565804 TAAGGAGCTGTCTGCGGCTGTGCTACTGCAACCACTTAACAGAGACATTTCCTGCATTATGTACTATACCCCCGGTGTGC
CCATGATTACAAGCATTCACTAATATATTTGGCCTGTCACTGTTTTACTCTGCAGCCTCAGTCATTTTCATTATCTGGAC
GACAAAGACCTTCAAGTTTTCAAAGTGCCAGTCGGACTGGAAGGAGCTGTGGATAGAAGATGCCTTCTGGCGGTTCCTCT
TCTCCACCATCCTTCTGGTCATCATGTTCCTGTGGAGGCCTTCGGCCAACAACCAGAGATATGCCTTCAGCCCCCTAGGG
GACGATGAGAGTGACGACGAGGAAAAGGAACAGCTGATGAACGATACATTTGAGGGGGTGAAGATGAGGGGTTTGAAGTC
CGAGACAAATGGAACAGCCAAGCCCAACAAAGTGGATGAGGATCTGAAATGGGTCGAAGAGAATATCCCCTCTTCAATGG
CAGATGTTGCACTCCCACCTCTACTGGACTCTGATGAGGAGACCATAACAACCAAATTTGAGATGTCCAAAATGGAATAG
ACGCAGGGAGACGATGCGTACTGCAGACAGAGACAGTGCAGCACGTTGGACAACCCTACGTCTGTGTATGAAGGATATTG
TTATCCTTCCTTATGAGCTTTGTAAGCAGCAGTTGTAAATACGATGGGATAAACTATGACGTAATGAGCAGACTACTTTT
CTTTCTTTTTTTGTATGCCT




Most similar to sp|Q8BXN9|TM87A_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8BXN9|TM87A_MOUSE Transmembrane protein 87A OS=Mus musculus
           GN=Tmem87a PE=1 SV=1
          Length = 555

 Score =  206 bits (525), Expect = 1e-52
 Identities = 98/155 (63%), Positives = 121/155 (78%), Gaps = 1/155 (0%)
 Frame = +3

Query: 96  FTNIFGLSLFYSAASVIFIIWTTKTFKFSKCQSDWKELWIEDAFWRFLFSTILLVIMFLW 275
           FTN   L++   AAS++FIIWTT  F+   CQSDW+ELW++DA WR LFS IL VIM LW
Sbjct: 404 FTNTLILAV---AASIVFIIWTTMKFRIVTCQSDWRELWVDDAIWRLLFSMILFVIMILW 460

Query: 276 RPSANNQRYAFSPLGDDESDDEEKEQLMNDTFEGVKMRGLKSETNGTAKPNKVDE-DLKW 452
           RPSANNQR+AFSPL +++ +DE+KE ++ ++FEG+KMR  K E NGT+K NK  E DLKW
Sbjct: 461 RPSANNQRFAFSPLSEEDEEDEQKEPMLKESFEGMKMRSTKQEPNGTSKVNKAQEDDLKW 520

Query: 453 VEENIPSSMADVALPPLLDSDEETITTKFEMSKME 557
           VEEN+PSS+ DVALP LLDSDEE + T FE SKME
Sbjct: 521 VEENVPSSVTDVALPALLDSDEERMITHFERSKME 555